PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S05308.40
Common NameJCGZ_21507, LOC105649611
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family ERF
Protein Properties Length: 178aa    MW: 19782 Da    PI: 10.3815
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S05308.40genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.22.4e-1960110255
            AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    +y+GVr+++ +g+++AeIrd +    + +r++lg+f taeeAa a+++a+ +++g
  Jcr4S05308.40  60 HYRGVRRRP-WGKFAAEIRDSTR---HgARVWLGTFQTAEEAALAYDRAAFRMRG 110
                    8********.**********422...25*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.6E-3159119IPR001471AP2/ERF domain
CDDcd000187.95E-3259118No hitNo description
SMARTSM003801.4E-3660124IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-2360120IPR016177DNA-binding domain
PfamPF008471.4E-1460110IPR001471AP2/ERF domain
PROSITE profilePS5103223.6360118IPR001471AP2/ERF domain
PRINTSPR003672.8E-116172IPR001471AP2/ERF domain
PRINTSPR003672.8E-1184100IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MVFTSQSELP FNENDSQDMV VYQMINESIS FNTSNMLPRN QINTSNRFQL QPTKTVAKKH  60
YRGVRRRPWG KFAAEIRDST RHGARVWLGT FQTAEEAALA YDRAAFRMRG SKALLNFPAE  120
VVAAAAATNN SPQKFKPNSE NSGGSSNVSQ SESESSTVTE ESRDVGPLAR TRLFGQVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-3459121466ATERF1
3gcc_A4e-3459121466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012091701.11e-130PREDICTED: pathogenesis-related genes transcriptional activator PTI5-like
SwissprotO046813e-58PTI5_SOLLC; Pathogenesis-related genes transcriptional activator PTI5
TrEMBLA0A067JB511e-130A0A067JB51_JATCU; Uncharacterized protein
STRINGPOPTR_0004s05100.12e-63(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93393042
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47220.16e-34ethylene responsive element binding factor 2
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]